PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G057000.1
Common NameB456_004G057000, LOC105793088
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 24836.1 Da    PI: 6.544
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G057000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-1884133355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ + +g
  Gorai.004G057000.1  84 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFSTRG 133
                         9*******.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-2283143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2983142IPR001471AP2/ERF domain
SMARTSM003801.1E-3583147IPR001471AP2/ERF domain
PROSITE profilePS5103222.64283141IPR001471AP2/ERF domain
PRINTSPR003678.1E-108495IPR001471AP2/ERF domain
PfamPF008475.1E-1284133IPR001471AP2/ERF domain
CDDcd000188.05E-1984142No hitNo description
PRINTSPR003678.1E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEEFFQYHAS SQSLFRLPSP STETLPGFWD ELLLNFNDFE EMVWDDMAAA ALDKSKNSDN  60
GVKEEGVTSD IPKMEELPKE EKAYRGVRKR PWGKYAAEIR DSTRNGVRVW LGTFDSPEAA  120
ALAYDQAAFS TRGPSATLNF PVEVVRESLR SIKYRCDEGC SPVLALKKRH CLRKRSKKNK  180
MVSPQKEVIS RETRQQKNLV VLEDLGSDYL EQLLTCSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2582144466ATERF1
3gcc_A1e-2582144466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5891031e-144JX589103.1 Gossypium hirsutum clone NBRI_GE23728 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477474.11e-163PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC83e-54ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2P7D91e-163A0A0D2P7D9_G
STRINGSolyc09g089930.1.13e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2434534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-55ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]